YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9758419
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRIYGGSA VIHLFLFFSV LIFSAASALS KNQSPSSGSG QINSNSVLVA LLDSRYTELA  60
   61 ELVEKALLLQ TLEDAVGRHN ITIFAPRNEA LERDLDPEFK RFLLEPGNLK SLQTLLMFHI 120
  121 IPNRVGSNQW PSEESGRVKH HTLGNDQVRL SNGQGKKMVD LAEIIRPDDL TRPDGLIHGI 180
  181 ERLLIPRSVQ EDFNRRRSLQ SISAVLPEGA PEVDPRTNRL KKPAAPVPAG SPPALPIQSA 240
  241 MAPGPSLAPA PAPGPGGKQH HFDGEAQVKD FIHTLLHYGG YNEMADILVN LTSLATEMGR 300
  301 LVSEGYVLTV LAPNDEAMAK LTTDQLSEPG APEQIVYYHI IPEYQTEESM YNSVRRFGKV 360
  361 KFDTLRFPHK VAAKEADGSV KFGDGEKSAY LFDPDIYTDG RISVQGIDGV LFPQEEEVVE 420
  421 SVKKPVKKIV QPRRGTLLFL LHLIFYVCSS NCVLSIDFLR VAKFR

Type	Start	End	Confidence
Signal Peptide	1	28	0.50
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	437	0.99
Transmembrane Helix	438	459	0.80
Cytoplasmic	460	465	0.72