YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12324168, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEAAKPRD STVNQQHQYY YGTFQGVANF PTPTPPPQFM QPQHPITTFP GHAYQNLQGH  60
   61 GGGVNYAQGF PVVVPVVEVR PMIEHELPCC GLGMGWFLFI MGFLFGGIPW YLGAFIVLVT 120
  121 SVDHREKAGY VACSIALHQY QVVGRALPTE KDEQPKIYRM KLWATNEVLA KSKFWYYLRR 180
  181 QKKVKKSNGQ MLAINEVLAV GSEFDLFSIF EKNPTTIKNF GIWLRYQSRT GYHNMYKEYR 240
  241 DTTLNGAVEQ MYTEMASRHR VRFPCIQIIK TATVPASLCK RESTKQFHNS KIKFPLVFRK 300
  301 VRPPTRKLKT TFKANKPNLF M

Type	Start	End	Confidence
Cytoplasmic	1	91	0.86
Transmembrane Helix	92	114	0.88
Non-Cytoplasmic	115	321	0.87