YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1B2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR  60
   61 PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS LLVLLSLLGS WMFLYLFRSS 120
  121 DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL 180
  181 FLDEQEPANA GLLSFIGNSA ATSAAASVVA GRV

Type	Start	End	Confidence
Cytoplasmic	1	74	0.94
Transmembrane Helix	75	95	0.82
Non-Cytoplasmic	96	98	0.70
Transmembrane Helix	99	117	0.89
Cytoplasmic	118	136	0.81
Transmembrane Helix	137	170	0.83
Non-Cytoplasmic	171	189	0.79
Transmembrane Helix	190	211	0.81
Cytoplasmic	212	213	0.77