YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.67
Transmembrane Helix	43	63	0.86
Cytoplasmic	64	74	0.61
Transmembrane Helix	75	94	0.78
Non-Cytoplasmic	95	100	0.58
Transmembrane Helix	101	120	0.83
Cytoplasmic	121	135	0.71
Transmembrane Helix	136	157	0.84
Non-Cytoplasmic	158	162	0.61
Transmembrane Helix	163	185	0.72
Cytoplasmic	186	218	0.47
Transmembrane Helix	219	241	0.84
Non-Cytoplasmic	242	287	0.59
Transmembrane Helix	288	310	0.83
Cytoplasmic	311	325	0.44
Transmembrane Helix	326	340	0.80
Non-Cytoplasmic	341	341	0.02
Transmembrane Helix	342	356	0.52
Cytoplasmic	357	365	0.50
Transmembrane Helix	366	386	0.85
Non-Cytoplasmic	387	393	0.44
Transmembrane Helix	394	416	0.88
Cytoplasmic	417	423	0.54
Transmembrane Helix	424	442	0.71
Non-Cytoplasmic	443	468	0.68
Transmembrane Helix	469	487	0.54
Cytoplasmic	488	532	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGAPAPK ADEPQPHPPK DQLPNISYCI TSPPPWPEAI LLGFQHYLVM LGTTVLIPTA  60
   61 LVPQMGGGYE EKAKVIQTIL FVAGINTLLQ TLFGTRLPAV VGASYTFVPT TISIILSGRF 120
  121 SDTSNPIDRF ERIMRATQGA LIVASTLQMI LGFSGLWRNV VRFLSPISAV PLVGLVGFGL 180
  181 YEFGFPGVAK CIEIGLPELL ILVFVSQYLP HVIKSGKNVF DRFAVIFAVV IVWIYAHLLT 240
  241 VGGAYNGAAP TTQTSCRTDR AGIIGAAPWI RVPWPFQWGA PSFDAGEAFA MMMASFVALV 300
  301 ESTGAFVAVS RYASATMLPP SILSRGIGWQ GVAILISGLF GTGAGSSVSV ENAGLLALTR 360
  361 VGSRRVVQIA AGFMIFFSIL GKFGAVFASI PAPIIAALYC LFFAYVGAGG LSFLQFCNLN 420
  421 SFRTKFILGF SVFLGLSIPQ YFNEYTAIKG YGPVHTGARW FNDMVNVPFS SEPFVAGSVA 480
  481 FFLDNTLHKK DSSIRKDRGK HWWDKFRSFK GDTRSEEFYS LPFNLNKYFP SV