YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8843778
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	30	0.73
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	72	0.98
Transmembrane Helix	73	95	0.88
Cytoplasmic	96	110	0.84
Transmembrane Helix	111	128	0.94
Non-Cytoplasmic	129	134	0.64
Transmembrane Helix	135	156	0.84
Cytoplasmic	157	176	0.79
Transmembrane Helix	177	193	0.81
Non-Cytoplasmic	194	197	0.71
Transmembrane Helix	198	217	0.80
Cytoplasmic	218	232	0.79
Transmembrane Helix	233	254	0.92
Non-Cytoplasmic	255	264	0.71
Transmembrane Helix	265	282	0.59
Cytoplasmic	283	517	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSTTTKL SVLCCSFISS PLVDSPPSLA FFSPIPRFLT VRIATSFRSS SRFPATKIRK  60
   61 SSLAAVMFPE NSVLSDVCAF GVTSIVAFSC LGFWGEIGKR GIFDQKLIRK LVHINIGLVF 120
  121 MLCWPLFSSG IQGALFASLV PGLNIVRMLL LGLGVYHDEG TIKSMSRHGD RRELLKGPLY 180
  181 YVLSITSACI YYWKSSPIAI AVICNLCAGD GMADIVGRRF GTEKLPYNKN KSFAGSIGMA 240
  241 TAGFLASVAY MYYFASFGYI EDSGGMILRF LVGLVTVTAF QTRKQHEEQE EDGEADDKNY 300
  301 RQDLTMHGVV SVSSEIMIGG FFADVKFNRS REKKLSLPPP FTVATRLYSL SSQIFLDLVD 360
  361 SVIADVASEC HRVARLGLDR DLDIVEEELR LSVEARAKIA DPSNNLETNT KYVVDIFGQT 420
  421 HPPVASEVFN CMNCGRQIVA GRFAPHLEKC MGKGRKARAK TTRSTTAAQN RNARRSPNPR 480
  481 YSPYPNSASE NQLASGSPGV AGEDCSNFTV RENVKGD