YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEELKNLIK VWVSAIISIS YCYYIPPRIK SGAPRFLSVS PVLALFLVLP LFFSSLHLSL  60
   61 ITAFFLTWLA NFKLILFSFD KGPLIPIPTN FPRFFCFTCF PIKVQQNPKS QNHLPKLVFA 120
  121 IKLAIFAVLL HLYSYRQNLS PTILLGLYFV HLYLEIEIIL TFVKVVVFIS LGCDLEPQSN 180
  181 KPYLATSLQD FWGRRWNLMV PAILRPAVYA PMRRVSERKM SSGWALFPGI LAAFIVSGLV 240
  241 HELLFFYLIR EMPTGEVTLF FVLHGVCTAV ELAVKKKTTV AQRWRLSPGV SRVLTVGFVF 300
  301 VTGGWLFTPQ LKRSGVMERF TSEAVLLVEF IKR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	27	0.72
Non-Cytoplasmic	28	41	0.44
Transmembrane Helix	42	69	0.81
Cytoplasmic	70	116	0.61
Transmembrane Helix	117	135	0.88
Non-Cytoplasmic	136	148	0.66
Transmembrane Helix	149	168	0.75
Cytoplasmic	169	221	0.84
Transmembrane Helix	222	245	0.89
Non-Cytoplasmic	246	253	0.82
Transmembrane Helix	254	274	0.81
Cytoplasmic	275	288	0.81
Transmembrane Helix	289	308	0.92
Non-Cytoplasmic	309	333	0.86