YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKLFIQ VWVSAIISVT YCYYLTPKIK TSLLRLLSVL PVCVLFLIIP IFFSTVHSSF  60
   61 TIAFFLSGLA VPKLILFALE KGPLFPLPPN LPHFVCFACF PIKLQKKPNP ENTNHFPKWV 120
  121 FALKVFIFGA LLLQAYHYKQ FLSTNFLLGL YALHIYLELE ISLTLIKFLV SITLGCDLEP 180
  181 QFNEPYLATS LHDFWGHRWN LMVSKILWLA VYNPIRQWRA KSSEWDRFFA IFATFLVSGV 240
  241 AHEILYFYLT REKPTWEVTW FFVLHGFCMA AEVALKRKTK LVQRWPVNPA VSRLLTVGFV 300
  301 FVTGVWLFSP QPIRHGLMER FINEDLFLID FFNRKLYILL GLFTSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.70
Transmembrane Helix	7	25	0.86
Cytoplasmic	26	32	0.73
Transmembrane Helix	33	53	0.90
Non-Cytoplasmic	54	59	0.51
Transmembrane Helix	60	77	0.74
Cytoplasmic	78	119	0.57
Transmembrane Helix	120	138	0.86
Non-Cytoplasmic	139	194	0.53
Transmembrane Helix	195	212	0.58
Cytoplasmic	213	227	0.81
Transmembrane Helix	228	249	0.91
Non-Cytoplasmic	250	257	0.79
Transmembrane Helix	258	275	0.93
Cytoplasmic	276	289	0.84
Transmembrane Helix	290	309	0.91
Non-Cytoplasmic	310	346	0.89