YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRERYDKVI EACSLSKDLE ILSFGDQTVI GERGINLSGG QKQRIHIARA LYQDADIYLF  60
   61 DDPFSAVDAH TGSHLFKEAL RGLLCSKSVI YVTHQVEFLP SADLTLVMKD GRISQAGKYN 120
  121 DILISGTDFR ELIGAHQESL AVVGSADASS VSENSALDEE NGVVRDDIGF DGKQESQDLK 180
  181 NDKLDSGEPQ RQFVQEEERA KGSVALDVYW KYITLAYGGA LVPFILLGQI LFQLLQIGSN 240
  241 YWMAWATPIS EDVQAPVKLS TLMVVYVALA FGSSLCILVR ATLLVTAGYK TATELFHKMH 300
  301 HCIFRSPMSF KIAKTCSKTC IYSS

Type	Start	End	Confidence
Cytoplasmic	1	212	0.98
Transmembrane Helix	213	235	0.88
Non-Cytoplasmic	236	261	0.91
Transmembrane Helix	262	284	0.85
Cytoplasmic	285	324	0.94