YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP26_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP  60
   61 GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP VGSPLPASSS VCLVSSQLSS 120
  121 LLLVLLMLLL AFCSFF

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	112	0.97
Transmembrane Helix	113	135	0.70
Cytoplasmic	136	136	0.78