YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMO21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLVESGWK YLVTHFSDFQ LACIGSFILH ESVFFLSGLP YIFLERTGFL SNYKIQTKSN  60
   61 TPEAQGKCIA RLLLYHCCVN LPLMMASYPV FRFMGMESSF PLPSWKVVSA QILFYFIIED 120
  121 FVFYWGHRIL HTKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL 180
  181 ITLWLWMMLR VIETVEAHCG YHFPWSPSNF LPLYGGSLIL MWESFAYSAD FHDYHHRLLY 240
  241 TKSGNYSSTF VYMDWIFGTD KGYRKLKALK ET

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.54
Transmembrane Helix	21	44	0.70
Cytoplasmic	45	71	0.72
Transmembrane Helix	72	91	0.85
Non-Cytoplasmic	92	106	0.65
Transmembrane Helix	107	127	0.81
Cytoplasmic	128	161	0.70
Transmembrane Helix	162	183	0.90
Non-Cytoplasmic	184	209	0.66
Transmembrane Helix	210	229	0.75
Cytoplasmic	230	272	0.80