YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9758728, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.99
Transmembrane Helix	36	59	0.93
Cytoplasmic	60	78	0.95
Transmembrane Helix	79	99	0.91
Non-Cytoplasmic	100	113	0.87
Transmembrane Helix	114	133	0.94
Cytoplasmic	134	155	0.90
Transmembrane Helix	156	178	0.91
Non-Cytoplasmic	179	189	0.71
Transmembrane Helix	190	210	0.90
Cytoplasmic	211	217	0.78
Transmembrane Helix	218	239	0.90
Non-Cytoplasmic	240	289	0.94
Transmembrane Helix	290	311	0.86
Cytoplasmic	312	330	0.78
Transmembrane Helix	331	353	0.89
Non-Cytoplasmic	354	385	0.82
Transmembrane Helix	386	410	0.77
Cytoplasmic	411	430	0.83
Transmembrane Helix	431	450	0.94
Non-Cytoplasmic	451	457	0.72
Transmembrane Helix	458	481	0.88
Cytoplasmic	482	486	0.77
Transmembrane Helix	487	508	0.78
Non-Cytoplasmic	509	523	0.65
Transmembrane Helix	524	542	0.63
Cytoplasmic	543	580	0.95
Transmembrane Helix	581	601	0.94
Non-Cytoplasmic	602	611	0.79
Transmembrane Helix	612	635	0.91
Cytoplasmic	636	694	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCPPFDFS TKYYDGDGGC QRQSSFFGGT TVLDQGVGYA VILGFGAFFA VFTSFLVWLE  60
   61 KRYVGARHTS EWFNTAGRNV KTGLIASVIV SQWTWAATIL QSSNVAWQYG VSGPFWYASG 120
  121 ATIQVLLFGV MAIEIKRKAP NAHTVCEIVK ARWGTATHIV FLVFCLATNV VVTAMLLLGG 180
  181 SAVVNALTGV NLYAASFLIP LGVVVYTLAG GLKATFLASY VHSVIVHVAL VVFVFLVYTS 240
  241 SKELGSPSVV YDRLKDMVAK SRSCTEPLSH HGQACGPVDG NFRGSYLTML SSGGAVFGLI 300
  301 NIVGNFGTVF VDNGYWVSAI AARPSSTHKG YLLGGLVWFA VPFSLATSLG LGALALDLPI 360
  361 SKDEADRGLV PPATAIALMG KSGSLLLLTM LFMAVTSAGS SELIAVSSLF TYDIYRTYIN 420
  421 PRATGRQILK ISRCAVLGFG CFMGILAVVL NKAGVSLGWM YLAMGVLIGS AVIPIAFMLL 480
  481 WSKANAFGAI LGATSGCVFG IITWLTTAKT QYGRVDLDST GKNGPMLAGN LVAILTVRPQ 540
  541 NYDWSTTREI KVVEAYASGD EDVDVPAEEL REEKLRRAKA WIVKWGLVFT ILIVVIWPVL 600
  601 SLPARVFSRG YFWFWAIVAI AWGTIGSIVI IGLPLVESWD TIKSVCMGMF TNDRVMKKLD 660
  661 DLNHRLRALT MAVPEAEKIY LLELEKTKKN DEEG