YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.92
Non-Cytoplasmic	56	111	0.95
Transmembrane Helix	112	133	0.91
Cytoplasmic	134	153	0.87
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	182	0.67
Transmembrane Helix	183	205	0.80
Cytoplasmic	206	214	0.58
Transmembrane Helix	215	238	0.84
Non-Cytoplasmic	239	270	0.51
Transmembrane Helix	271	297	0.76
Cytoplasmic	298	335	0.47
Transmembrane Helix	336	356	0.91
Non-Cytoplasmic	357	375	0.65
Transmembrane Helix	376	394	0.81
Cytoplasmic	395	400	0.56
Transmembrane Helix	401	420	0.90
Non-Cytoplasmic	421	438	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGASSPASL RASRSRRLGK ETNRSDLFKK PAVPFAFALI LADAILVALI IAYVPYTKID  60
   61 WDAYMSQVSG FLGGERDYGN LKGDTGPLVY PAGFLYVYSA VQNLTGGEVY PAQILFGVLY 120
  121 IVNLGIVLII YVKTDVVPWW ALSLLCLSKR IHSIFVLRLF NDCFAMTLLH ASMALFLYRK 180
  181 WHLGMLVFSG AVSVKMNVLL YAPTLLLLLL KAMNIIGVVS ALAGAALVQI LVGLPFLITY 240
  241 PVSYIANAFD LGRVFIHFWS VNFKFVPERV FVSKEFAVCL LIAHLFLLVA FANYKWCKHE 300
  301 GGIIGFMRSR HFFLTLPSSL SFSDVSASRI ITKEHVVTAM FVGNFIGIVF ARSLHYQFYS 360
  361 WYFYSLPYLL WRTPFPTWLR LIMFLGIELC WNVYPSTPSS SGLLLCLHLI ILVGLWLAPS 420
  421 VDPYQLKEHP KSQIHKKA