YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10086491, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLEEETST ENNAPSQEAE LPFSKWSPSK YIWRGLSVPI IAGQVVLRIL KGKIHWRNTL  60
   61 QQLERTGPKS LGVCLLTSTF VGMAFTIQFV REFTRLGLNR SIGGVLALAF SRELSPVITS 120
  121 IVVAGRMGSA FAAELGTMQV SEQTDTLRVL GADPIDYLIT PRVIASCLAL PFLTLMCFTV 180
  181 GMASSALLSD AVYGISINII MDSAHRALRP WDIVSAMIKS QVFGAIISVI SCSWGVTTTG 240
  241 GAKGVGESTT SAVVMSLVGI FIADFVLSSF FFQGAGDSLK NCV

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.61
Transmembrane Helix	31	50	0.85
Cytoplasmic	51	69	0.63
Transmembrane Helix	70	90	0.89
Non-Cytoplasmic	91	107	0.52
Transmembrane Helix	108	128	0.58
Cytoplasmic	129	162	0.56
Transmembrane Helix	163	184	0.74
Non-Cytoplasmic	185	185	0.19
Transmembrane Helix	186	201	0.52
Cytoplasmic	202	216	0.46
Transmembrane Helix	217	242	0.78
Non-Cytoplasmic	243	249	0.47
Transmembrane Helix	250	272	0.87
Cytoplasmic	273	283	0.49