YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U79B4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKFHAFLY PWFGFGHMIP YLHLANKLAE KGHRVTFLAP KKAQKQLEPL NLFPNSIHFE  60
   61 NVTLPHVDGL PVGAETTADL PNSSKRVLAD AMDLLREQIE VKIRSLKPDL IFFDFVDWIP 120
  121 QMAKELGIKS VSYQIISAAF IAMFFAPRAE LGSPPPGFPS SKVALRGHDA NIYSLFANTR 180
  181 KFLFDRVTTG LKNCDVIAIR TCAEIEGNLC DFIERQCQRK VLLTGPMFLD PQGKSGKPLE 240
  241 DRWNNWLNGF EPSSVVYCAF GTHFFFEIDQ FQELCLGMEL TGLPFLVAVM PPRGSSTIQE 300
  301 ALPEGFEERI KGRGIVWGGW VEQPLILSHP SIGCFVNHCG FGSMWESLVS DCQIVFIPQL 360
  361 VDQVLTTRLL TEELEVSVKV KRDEITGWFS KESLRDTVKS VMDKNSEIGN LVRRNHKKLK 420
  421 ETLVSPGLLS SYADKFVDEL ENHIHSKN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.65
Transmembrane Helix	8	25	0.52
Cytoplasmic	26	129	0.66
Transmembrane Helix	130	146	0.61
Non-Cytoplasmic	147	448	0.94