YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRX9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLERSKKK AQVWKKAVIH FSLCFVMGFF TGFAPAGKAS FFSNFETTSY TSTKSPIPPQ  60
   61 PFENATYTQH SLLNRTLINS QSQAPAPAES REAEGETRSL SEKEDENQVK VTPRGLVIVV 120
  121 TPIITKDRYK NVLLRRMANT LRLVPPPLLW IVVEKHSDGE EKSSSTMLRK TGIMYRRIVF 180
  181 KEDFTSLESE LDHQRNLALR HIEHHKLSGI VHFAGLNNIY DLDFFVKIRD IEVFGTWPMA 240
  241 LLSANRKRVV VEGPVCESSQ VLGWHLRKIN NETETKPPIH ISSFAFNSSI LWDPERWGRP 300
  301 SSVEGTKQDS IKYVKQVVLE DDTKLKGLPA QDCSKIMLWR LKFPTRTRLS T

Type	Start	End	Confidence
Cytoplasmic	1	16	0.89
Transmembrane Helix	17	37	0.85
Non-Cytoplasmic	38	351	0.99