YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	63	0.83
Non-Cytoplasmic	64	76	0.74
Transmembrane Helix	77	98	0.85
Cytoplasmic	99	110	0.79
Transmembrane Helix	111	133	0.91
Non-Cytoplasmic	134	152	0.87
Transmembrane Helix	153	172	0.89
Cytoplasmic	173	179	0.80
Transmembrane Helix	180	203	0.87
Non-Cytoplasmic	204	210	0.73
Transmembrane Helix	211	234	0.91
Cytoplasmic	235	252	0.90
Transmembrane Helix	253	274	0.91
Non-Cytoplasmic	275	291	0.82
Transmembrane Helix	292	315	0.69
Cytoplasmic	316	336	0.85
Transmembrane Helix	337	360	0.85
Non-Cytoplasmic	361	376	0.82
Transmembrane Helix	377	398	0.82
Cytoplasmic	399	406	0.70
Transmembrane Helix	407	428	0.89
Non-Cytoplasmic	429	436	0.66
Transmembrane Helix	437	458	0.94
Cytoplasmic	459	469	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPTSKDDH DGEGGRDKSS TFVQKLIDVE EAKTQIIYSL PMIFTNLFYY CIPLTSVMFA  60
   61 SQLGQLELAG ATLANSWATV TGFAFMTGLS GALETLCGQG FGAKSYRMLG IHLQSSCIVS 120
  121 LVFTILITIL WFFTESVFLL LRQDPSISKQ AALYMKYLAP GLLAYGFLQN ILRFCQTQCI 180
  181 VTPLVLFSFL PLVINIGTTY ALVHLAGLGF IGAPIATSIS LWIAFVSLGF YVICSDKFKE 240
  241 TWTGFSMESF HHVVLNLTLS IPSAAMVCLE YWAFEILVFL AGLMRNPEIT TSLVAICVNT 300
  301 ESISYMLTCG LSAATSTRVS NELGAGNVKG AKKATSVSVK LSLVLALGVV IAILVGHDAW 360
  361 VGLFSNSHVI KEGFASLRFF LAASITLDSI QGVLSGVARG CGWQRLATVI NLGTFYLIGM 420
  421 PISVLCGFKL KLHAKGLWIG LICGMFCQSA SLLLMTIFRK WTKLTAATV