YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALIS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV  60
   61 IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI QGTGNKSCTR TLIVPKRMKQ 120
  121 PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL 180
  181 FNDTYVLSRN NQGLTVNKKG IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ 240
  241 EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG 300
  301 GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Type	Start	End	Confidence
Cytoplasmic	1	48	0.54
Transmembrane Helix	49	68	0.61
Non-Cytoplasmic	69	305	0.90
Transmembrane Helix	306	330	0.89
Cytoplasmic	331	350	0.89