YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLETTRAE LGLVVVYLNK AEARDKICRA IQYGSKFLSD GQPGTAQNVD KNTSLARKVF  60
   61 RLFKFVNDLH ALISPVPKGT PLPLVLLGKS KNALLSTFLF LDQIVWLGRT GIYKDKERAE 120
  121 ILGRISLFCW MGSSVCTSLV EVGELGRLSA SIKKLEKEIG NKDKHQNEQY RAKVEKSNER 180
  181 SLALIKAGMD VVVAFGLLQL APKKVTPRVT GAFGFASSLI SCYQLLPSHP KSKMV

Type	Start	End	Confidence
Cytoplasmic	1	181	0.51
Transmembrane Helix	182	201	0.41
Non-Cytoplasmic	202	208	0.77
Transmembrane Helix	209	227	0.54
Cytoplasmic	228	235	0.44