YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7529266, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK  60
   61 LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG GQLNVPPGRW LTAPFNLTSY 120
  121 MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS 180
  181 INGQGQTWWK KYRQKLLNHT RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN 240
  241 MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI 300
  301 RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV 360
  361 TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY GQGVRVPVRI QGSKEIPVKN 420
  421 VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI 480
  481 DYEI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	31	0.86
Non-Cytoplasmic	32	484	0.77