YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8953748, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR  60
   61 FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM ERIMAQSPEI SSPRTSGRLS 120
  121 HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR 180
  181 EETRAQNAQL HAAVSVAGVA AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC 240
  241 VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA 300
  301 VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI 360
  361 NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR EMLEGGENLR YFGLKTVEKR 420
  421 VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC

Type	Start	End	Confidence
Cytoplasmic	1	187	0.75
Transmembrane Helix	188	211	0.82
Non-Cytoplasmic	212	453	0.94