YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUD23_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKAVQILGW SSGLTISQRL TKTRKSSTVS FISSSLNLSS VTSSSPRRIF SFKPTRMSSS  60
   61 LPGSDPVANS PTFVSVQSAG DVRKIKFCQW CGGPTKHEIP DGEEKLRAIC THCGKIAYQN 120
  121 PKMVVGCLIE HEGKVLLCKR NIQPSHGLWT LPAGYLEVGE SAAQGAMRET WEEAGATVEV 180
  181 ISPFAQLDIP LIGQTYVIFL AKLKNLHFAP GPESLECRLF ALDEIPFDSL AFSSIYVTLN 240
  241 LYLEDLKKGK LKFHYGTINK RPGSSPSDIR AFSLDYHLQP

Type	Start	End	Confidence
Signal Peptide	1	43	0.65
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	280	0.99