YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	4CLL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG  60
   61 DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV VSLVLPNSVY FPMIFLSLIS 120
  121 LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI 180
  181 ENPKFYSIMK ESFGFVPKPL IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE 240
  241 ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT 300
  301 HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM 360
  361 TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS FLPPGNRGEL WIQGPGVMKG 420
  421 YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS 480
  481 HPLIIDAAVT AAPNEECGEI PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS 540
  541 IPKSPTGKIL RKELKRILTN SVSSRL

Type	Start	End	Confidence
Cytoplasmic	1	77	0.71
Transmembrane Helix	78	94	0.40
Non-Cytoplasmic	95	108	0.55
Transmembrane Helix	109	129	0.78
Cytoplasmic	130	253	0.53
Transmembrane Helix	254	280	0.60
Non-Cytoplasmic	281	566	0.66