YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9454535, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKYVFSFV ITSLVCVVLL ATSFNIGLMS SLRPPINGTL SSFPKNDSNV VGKQPREDDK  60
   61 LPRFAYLVSG SKGDLESLWR TLRALYHPRN QYIVHLDLES PVDERSELAS RISNDPMYSK 120
  121 AGNVYMITKA NLVTYTGPTM VANTLHACAI LLKRTPDWDW FINLSASDYP LVTQDDLIHT 180
  181 FSTLDRNLNF IEHTSSLGWK YKKRAMPLII DPGLYMLNKS NVLLVRPNRS LPSAFKLFTG 240
  241 SAWMALSHAF VEYIIYGWDN LPRTLLMYYT NFVSSPEGYF HTVICNVPEF SKTAVNHDLH 300
  301 YIAWDKPPRQ HPRMLSQRDM GKMISSGSAF GRKFRRNDTV LDKIDKELLI RINEDGFTPG 360
  361 GWCGGKPECS VVEDVARIRP SSGAVRLKEL VDRLVTEAKL GKNQCV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	28	0.58
Non-Cytoplasmic	29	406	0.93