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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: THE1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFTKSLLVL LWFLSCYTTT TSSALFNPPD NYLISCGSSQ NITFQNRIFV PDSLHSSLVL  60
   61 KIGNSSVATS TTSNNSTNSI YQTARVFSSL ASYRFKITSL GRHWIRLHFS PINNSTWNLT 120
  121 SASITVVTED FVLLNNFSFN NFNGSYIFKE YTVNVTSEFL TLSFIPSNNS VVFVNAIEVV 180
  181 SVPDNLIPDQ ALALNPSTPF SGLSLLAFET VYRLNMGGPL LTSQNDTLGR QWDNDAEYLH 240
  241 VNSSVLVVTA NPSSIKYSPS VTQETAPNMV YATADTMGDA NVASPSFNVT WVLPVDPDFR 300
  301 YFVRVHFCDI VSQALNTLVF NLYVNDDLAL GSLDLSTLTN GLKVPYFKDF ISNGSVESSG 360
  361 VLTVSVGPDS QADITNATMN GLEVLKISNE AKSLSGVSSV KSLLPGGSGS KSKKKAVIIG 420
  421 SLVGAVTLIL LIAVCCYCCL VASRKQRSTS PQEGGNGHPW LPLPLYGLSQ TLTKSTASHK 480
  481 SATASCISLA STHLGRCFMF QEIMDATNKF DESSLLGVGG FGRVYKGTLE DGTKVAVKRG 540
  541 NPRSEQGMAE FRTEIEMLSK LRHRHLVSLI GYCDERSEMI LVYEYMANGP LRSHLYGADL 600
  601 PPLSWKQRLE ICIGAARGLH YLHTGASQSI IHRDVKTTNI LLDENLVAKV ADFGLSKTGP 660
  661 SLDQTHVSTA VKGSFGYLDP EYFRRQQLTE KSDVYSFGVV LMEVLCCRPA LNPVLPREQV 720
  721 NIAEWAMAWQ KKGLLDQIMD SNLTGKVNPA SLKKFGETAE KCLAEYGVDR PSMGDVLWNL 780
  781 EYALQLEETS SALMEPDDNS TNHIPGIPMA PMEPFDNSMS IIDRGGVNSG TGTDDDAEDA 840
  841 TTSAVFSQLV HPRGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle