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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB18G_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVSAEILD ISHTGGNESP TLGELLKDFN DSGRKKYPGE NAPTQHILDL APAAETRSVP  60
   61 FLLSFNNLSY NVVLRRRFDF SRRKTASVKT LLDDITGEAR DGEILAVLGG SGAGKSTLID 120
  121 ALAGRVAEDS LKGTVTLNGE KVLQSRLLKV ISAYVMQDDL LFPMLTVKET LMFASEFRLP 180
  181 RSLPKSKKME RVETLIDQLG LRNAADTVIG DEGHRGVSGG ERRRVSIGID IIHDPILLFL 240
  241 DEPTSGLDST NAFMVVQVLK RIAQSGSVVI MSIHQPSARI IGLLDRLIIL SHGKSVFNGS 300
  301 PVSLPSFFSS FGRPIPEKEN ITEFALDVIR ELEGSSEGTR DLVEFNEKWQ QNQTARATTQ 360
  361 SRVSLKEAIA ASVSRGKLVS GSSGANPISM ETVSSYANPP LAETFILAKR YIKNWIRTPE 420
  421 LIGMRIGTVM VTGLLLATVY WRLDNTPRGA QERMGFFAFG MSTMFYCCAD NIPVFIQERY 480
  481 IFLRETTHNA YRTSSYVISH ALVSLPQLLA LSIAFAATTF WTVGLSGGLE SFFYYCLIIY 540
  541 AAFWSGSSIV TFISGLIPNV MMSYMVTIAY LSYCLLLGGF YINRDRIPLY WIWFHYISLL 600
  601 KYPYEAVLIN EFDDPSRCFV KGVQVFDGTL LAEVSHVMKV KLLDTLSGSL GTKITESTCL 660
  661 RTGPDLLMQQ GITQLSKWDC LWITLAWGLF FRILFYLSLL FGSKNKRT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle