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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1668_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLFLILCF ILTHFFAIAT SLNDQGLALL SFKQSIQNQS DSVFTNWNSS DSNPCSWQGV  60
   61 TCNYDMRVVS IRLPNKRLSG SLDPSIGSLL SLRHINLRDN DFQGKLPVEL FGLKGLQSLV 120
  121 LSGNSFSGFV PEEIGSLKSL MTLDLSENSF NGSISLSLIP CKKLKTLVLS KNSFSGDLPT 180
  181 GLGSNLVHLR TLNLSFNRLT GTIPEDVGSL ENLKGTLDLS HNFFSGMIPT SLGNLPELLY 240
  241 VDLSYNNLSG PIPKFNVLLN AGPNAFQGNP FLCGLPIKIS CSTRNTQVVP SQLYTRRANH 300
  301 HSRLCIILTA TGGTVAGIIF LASLFIYYLR KASARANKDQ NNRTCHINEK LKKTTKPEFL 360
  361 CFKTGNSESE TLDENKNQQV FMPMDPEIEF DLDQLLKASA FLLGKSRIGL VYKVVLENGL 420
  421 MLAVRRLEDK GWLRLKEFLA DVEAMAKIKH PNVLNLKACC WSPEEKLLIY DYIPNGDLGS 480
  481 AIQGRPGSVS CKQLTWTVRL KILRGIAKGL TYIHEFSPKR YVHGHINTSN ILLGPNLEPK 540
  541 VSGFGLGRIV DTSSDIRSDQ ISPMETSSPI LSRESYYQAP EAASKMTKPS QKWDVYSFGL 600
  601 VILEMVTGKS PVSSEMDLVM WVESASERNK PAWYVLDPVL ARDRDLEDSM VQVIKIGLAC 660
  661 VQKNPDKRPH MRSVLESFEK LVTSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle