YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8920573, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFKFFFAA IILVLFHPAA ITFVASYGSL QLGDQCSSDE DCNVGLGCFK CGIDVARCVR  60
   61 SNITDQFSIV NNSMPFNKYA FLTTHNSYAI EGKALHVATQ EDTIVQQLNS GVRALMLDTY 120
  121 DYEGDVWFCH SFDEQCFEFT KFNRAIDTFK EIFAFLTANP SEIVTLILED YVKSQNGLTK 180
  181 VFTDSGLKKF WFPVQNMPIG GQDWPLVKDM VANNHRLIVF TSAKSKQETE GIAYQWNYMV 240
  241 ENQYGDDGVK PDECSNRADS ALLTDKTKAL VSVNHFKTVP VKILTCEENS EQLLDMIKTC 300
  301 YVAAGNRWAN FVAVNFYKRS NGGGTFQAID KLNGELLCGR DDVHAC

Type	Start	End	Confidence
Signal Peptide	1	26	0.85
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	346	0.99