YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6730712, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIMGLFDL EKHFAFYGAY HSNPINILIH IIFVWPIFFS VLLLLHSSTP IFDPSQLGFS  60
   61 QSLTLDGVLR FNVGFIFALI YALFYIGLDK KSGFVAALMC FSCWVGSSFL AVRLGSSLAL 120
  121 KVGLASQLLC WTGQFVGHGV FEKRAPALLD NLLQAFLMAP FFVLLEVLQS VFGYEPYPGF 180
  181 QARVNAKVES DIKEYRAKKQ KKNKIT

Type	Start	End	Confidence
Cytoplasmic	1	25	0.69
Transmembrane Helix	26	46	0.89
Non-Cytoplasmic	47	66	0.69
Transmembrane Helix	67	87	0.92
Cytoplasmic	88	93	0.65
Transmembrane Helix	94	114	0.91
Non-Cytoplasmic	115	121	0.52
Transmembrane Helix	122	141	0.67
Cytoplasmic	142	151	0.64
Transmembrane Helix	152	172	0.79
Non-Cytoplasmic	173	206	0.71