YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15226871, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNLAGDSI PGPKWRKVAY GGMQIGYDDN YTDESFLEEM VMNANVVRRD LLKVMKDSVS  60
   61 ISQYLCIVAL VVLVWVHTLE SSLDENSLLL LDLSLLASGF LILLLTEEKM LSLSLLLRYL 120
  121 VNISFFTTGL YILAPIYQTL TRSISSDSIW AVTVSLLLLH LFLHDYSGST IRAPGALKTP 180
  181 NLTSCISVNA SIVASVFVAS RLPSRLHVFA VMLFSLQVFL FAPLVTYCIK KFNFGLHLLF 240
  241 SFALMGLTLY SIYALHRLFF LVFLSLVLLV NVVCPYWLIR MQEYKFEING PWDEAKLCFD 300
  301 ITD

Type	Start	End	Confidence
Cytoplasmic	1	58	0.99
Transmembrane Helix	59	79	0.93
Non-Cytoplasmic	80	87	0.86
Transmembrane Helix	88	106	0.96
Cytoplasmic	107	114	0.94
Transmembrane Helix	115	137	0.89
Non-Cytoplasmic	138	147	0.72
Transmembrane Helix	148	164	0.95
Cytoplasmic	165	178	0.81
Transmembrane Helix	179	199	0.89
Non-Cytoplasmic	200	205	0.79
Transmembrane Helix	206	227	0.92
Cytoplasmic	228	233	0.81
Transmembrane Helix	234	254	0.91
Non-Cytoplasmic	255	258	0.81
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	303	0.96