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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1357_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLRKKYLE HLLCVLIFFT YVIGYGEAQS KSFLVDCGSN ATTEVDGRTW VGDLSPNKSV  60
   61 TLQGFDAITA STSKGSSVYA EIYKTARVFD AVLNYTFEGI TQGNYFVRLH FSPFAIENHN 120
  121 VNESSFSVFA DGLRLMLDIN IAGEIAHKNL ILESTGHNAT ASSLVKEFLL PTGPGKLVLS 180
  181 FIPEKGSFGF VNAIEIVSVD DKLFKESVTK VGGSEVELGL GGRGIETMYR LNVGGPKLGP 240
  241 SKDLKLYRTW ETDLSYMVIE NAGVEVKNSS NITYALADDS PVAPLLVYET ARMMSNTEVL 300
  301 EKRFNISWKF EVDPNFDYLV RLHFCELLVD KQNQRIFRIY INNQTAAGNF DIFAHAGGKN 360
  361 KGIYQDYLDP VSSKNDVLWI QLGPDSSVGA SGDALLSGLE IFKLSKNGNL AHLIRFDSTG 420
  421 HSVSDSKMRI IWISVGAGIA IIIFFVFLGI LVVCLCKKRR SKSDESKNNP PGWRPLFLHV 480
  481 NNSTANAKAT GGSLRLNTLA ASTMGRKFTL AEIRAATKNF DDGLAIGVGG FGKVYRGELE 540
  541 DGTLIAIKRA TPHSQQGLAE FETEIVMLSR LRHRHLVSLI GFCDEHNEMI LVYEYMANGT 600
  601 LRSHLFGSNL PPLSWKQRLE ACIGSARGLH YLHTGSERGI IHRDVKTTNI LLDENFVAKM 660
  661 SDFGLSKAGP SMDHTHVSTA VKGSFGYLDP EYFRRQQLTE KSDVYSFGVV LFEAVCARAV 720
  721 INPTLPKDQI NLAEWALSWQ KQRNLESIID SNLRGNYSPE SLEKYGEIAE KCLADEGKNR 780
  781 PMMGEVLWSL EYVLQIHEAW LRKQNGENSF SSSQAVEEAP ESFTLPACSN QDSSETEQSQ 840
  841 TGSALHNSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle