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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11357202, gi|...
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRATSLNRS EPSDLESTVR RSTKRFNGQI SMSFKKRRCL TLFFLVLLSK QQSLSFLPIA  60
   61 GIVFPVALIS HFNFCMAPAV LANLNEPLFL GQCGAVFMRK YTNQPLSGDI NNPLFNPNPN 120
  121 PNSISAYGNN SSKHFDDSSA YGDYVSFDLD GYTSNQLREL KKRLNSELEE VRFLRERIES 180
  181 GTFVSGSVYT TQARSFAGET NDVGVKKTKT KKKKIGHGQK RSNPFATDEP SLKRHVALDL 240
  241 MSEKVLKSMM TTCGQILVKL MKHKWSWVFL NPVDVVGLGL HDYHRIVDKP MDLGTVKMNL 300
  301 EKGLYRSPID FASDVRLTFT NAMSYNPKGQ DVYLMAEKLL SQFDVWFNPT LKRFEAQEVK 360
  361 VMGSSSRPGP EDNQRVWNQN NVAENARKGP EQISIAKKLD SVKPLLPTLP PPPVIEITRD 420
  421 PSPPPSPVQP PPPPSPPPQP VNQVEASLEV RETNKGRKGK LPKPKAKDPN KREMTMDEKG 480
  481 KLGVNLQELP PEKLGQLIQI LRKRTRDLPQ DGDEIELDIE ALDNETLWEL DRFVTNYRKM 540
  541 ASKIKRQGFI QNVSTPPRNM PPVTEMGSAE KRGRKGGEAG EEDVDIGEDI PVEDYPSVEI 600
  601 ERDGTAAAAS GGSSSSGSFS SSGSSSSSDS ESGSSSGSDS DADSVQSPFV EAKEAPWNLC 660
  661 VNGRERKEGK LERKDFEC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle