YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLSNAAVI TTNAILALIG LAALSFSVYV YVQGPSQCQR FVQNPLIVTA ALLFFISSLG  60
   61 LIAALYGSHI IITLYLFFLF LSILLLLVLS VFIFLVTNPT AGKALSGRGI GNVKTGDYQN 120
  121 WIGNHFLRGK NWEGITKCLS DSRVCKRFGP RDIDFDSKHL SNVQFGCCRP PVECGFESKN 180
  181 ATWWTVPATA TTAIIGDCKA WSNTQRQLCY ACESCKIGVL KGIRKRWRIL IVVNLLLILL 240
  241 VVFLYSCGCC VRKNNRVPWK RRFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.58
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	44	0.52
Transmembrane Helix	45	67	0.90
Non-Cytoplasmic	68	73	0.45
Transmembrane Helix	74	96	0.93
Cytoplasmic	97	228	0.60
Transmembrane Helix	229	249	0.93
Non-Cytoplasmic	250	264	0.58