YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21281016, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIISLVVA MIAVLALPIR GQQQPLSQCT PSMMTTVSPC MGFITNSSSN GTSPSSDCCN  60
   61 SLRSLTTGGM GCLCLIVTGT VPFNIPINRT TAVSLPRACN MPRVPLQCQA NIAPAAAPGP 120
  121 AATFGPSMSP GPETDPIVPE PTPAAQTPQS DTTRPFTPSV DGGAPTSDDG GSTSRPSETP 180
  181 SSAYALSPSL LFFSIALVAL KFY

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	182	0.98
Transmembrane Helix	183	202	0.66
Cytoplasmic	203	203	0.69