YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	54	0.91
Transmembrane Helix	55	75	0.93
Cytoplasmic	76	102	0.94
Transmembrane Helix	103	129	0.85
Non-Cytoplasmic	130	168	0.91
Transmembrane Helix	169	191	0.84
Cytoplasmic	192	200	0.87
Transmembrane Helix	201	224	0.91
Non-Cytoplasmic	225	237	0.86
Transmembrane Helix	238	259	0.90
Cytoplasmic	260	268	0.85
Transmembrane Helix	269	288	0.83
Non-Cytoplasmic	289	291	0.70
Transmembrane Helix	292	311	0.77
Cytoplasmic	312	533	0.80
Transmembrane Helix	534	556	0.93
Non-Cytoplasmic	557	576	0.87
Transmembrane Helix	577	598	0.95
Cytoplasmic	599	707	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNMRSLVKM LMVVLFLGWI FVWIMISTNR FQNIWTPKLA KYLKTTYFGP QGMNLVLLTV  60
   61 PMMFIAVLSC VYLHTQKQPS QTQSLYKCRE WKVKGRMGRV MMVMNPLGIV TATELTFSLL 120
  121 FLALLVWALS NYLYLSYHVH LHNHDNANDM CRWQAKFRAF GLRIGYVGHY CWAFLFFPVT 180
  181 RASTILPLVG LTSESSIKYH IWLGHVSNFC FLVHTVVFLI YWAMVNKLME TFAWNATYVP 240
  241 NLAGTIAMVI GIAIWVTSLP SFRRKKFEIF FYTHHLYGLY IVFYAIHVGD SWFCMILPNI 300
  301 FLFFIDRYLR FLQSTKRSRL VSAKILPSDN LELTFAKTSG LHYTPTSILF LHVPSISKLQ 360
  361 WHPFTITSSS NLEKDTLSVV IRKQGSWTQK LYTHLSSSID SLEVSTEGPY GPNSFDVSRH 420
  421 DSLILVGGGS GVTPFISVIR ELIFQSQNRS TKLPNVLLVC AFKNYHDLAF LDLIFPSDIS 480
  481 VSDISKLNLR IEAYITREDK KPETTDDHKL LQTKWFKPQP LDSPISPVLG PNNFLWLGVV 540
  541 ILSSFVMFLL LIGIVTRYYI YPVDHNTGSI YNFTYRVLWV MFLGCVCIFI SSSIIFLWRK 600
  601 KENKEGDKDS KKQVQSVEFQ TPTSSPGSWF HGHERELESV PYQSIVQATS VHFGSKPNLK 660
  661 KILFEAEGSE DVGVMVCGPK KMRHEVAKIC SSGLAKNLHF EAISFNW