YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25309853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	33	0.94
Non-Cytoplasmic	34	62	0.91
Transmembrane Helix	63	83	0.94
Cytoplasmic	84	113	0.94
Transmembrane Helix	114	136	0.91
Non-Cytoplasmic	137	168	0.90
Transmembrane Helix	169	189	0.87
Cytoplasmic	190	209	0.80
Transmembrane Helix	210	233	0.91
Non-Cytoplasmic	234	247	0.89
Transmembrane Helix	248	268	0.91
Cytoplasmic	269	281	0.74
Transmembrane Helix	282	304	0.86
Non-Cytoplasmic	305	349	0.76
Transmembrane Helix	350	370	0.54
Cytoplasmic	371	539	0.79
Transmembrane Helix	540	562	0.93
Non-Cytoplasmic	563	580	0.76
Transmembrane Helix	581	603	0.89
Cytoplasmic	604	693	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLGETNKKV IKNVIKLLTM VILMGTVVIW IMMPTSTYKK IWLKSMRAKL GKSIYFGKPG  60
   61 VNLLVYMFPM ILLASLGSIY LHLKKQTRVN QFNRMDRKKI DKFGALKRPM LVKAGLGIVT 120
  121 VTEVMFLMMF MALLLWSLAN YFYHTFVTIT PQSLPTDGDN LWQARLDSIA VRLGLTGNIC 180
  181 LGFLFYPVAR GSSLLAAVGL TSESSTKYHI WLGNLVMTLF TSHGLCYCIY WISTNQVSQM 240
  241 LEWDRTGISH LAGEIALVAG LLMWATTFPA IRRRFFEVFF YTHYLYMVFM LFFVFHVGIS 300
  301 YALISFPGFY IFMVDRFLRF LQSRNNVKLV SARVLPCETV ELNFSKNPML MYSPTSILFV 360
  361 NIPSISKLQW HPFTITSSSK LEPKKLSVMI KSQGKWSSKL HHMLASSNQI DHLAVSVEGP 420
  421 YGPASTDYLR HDSLVMVSGG SGITPFISII RDLLYVSSTN AYKTPKITLI CAFKNSSDLS 480
  481 MLNLILPNST EISSFIDIQI KAFVTREKVS TCNMNIIKTL SFKPYVSDQP ISPILGPNSW 540
  541 LWLATILSSS FMIFIIIIAI ISRYHIYPID QSSKEYTSAY TSLIYLLAIS ISVVATSTVA 600
  601 MLCNKKSYFK GLYQNVDALS PLMIESSPDQ LLPEFTNIHY GERPNLNKLL VGLKGSSVGV 660
  661 LVCGPRKMRE EVAKICSFGS AANLQFESIS FNW