YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPELLVIL AEWVLYRLLA KSCYRAARKL RGYGFQLKNL LSLSKTQSLH NNSQHHLHNH  60
   61 HQQNHPNQTL QDSLDPLFPS LTKYQELLLD KNRACSVSSD HYRDTFFCDI DGVLLRQHSS 120
  121 KHFHTFFPYF MLVAFEGGSI IRAILLLLSC SFLWTLQQET KLRVLSFITF SGLRVKDMDN 180
  181 VSRSVLPKFF LENLNIQVYD IWARTEYSKV VFTSLPQVLV ERFLREHLNA DDVIGTKLQE 240
  241 IKVMGRKFYT GLASGSGFVL KHKSAEDYFF DSKKKPALGI GSSSSPQDHI FISICKEAYF 300
  301 WNEEESMSKN NALPRERYPK PLIFHDGRLA FLPTPLATLA MFIWLPIGFL LAVFRISVGV 360
  361 FLPYHVANFL ASMSGVRITF KTHNLNNGRP EKGNSGVLYV CNHRTLLDPV FLTTSLGKPL 420
  421 TAVTYSLSKF SEFIAPLKTV SLKRDRKKDG EAMQRLLSKG DLVVCPEGTT CREPYLLRFS 480
  481 PLFAELTEDI VPVAVDARVS MFYGTTASGL KCLDPIFFLM NPRPVYCLEI LKKLPKEMTC 540
  541 AGGKSSFEVA NFIQGELARV LGFECTNLTR RDKYLVLAGN EGIVR

Type	Start	End	Confidence
Non-Cytoplasmic	1	125	0.66
Transmembrane Helix	126	154	0.69
Cytoplasmic	155	328	0.74
Transmembrane Helix	329	354	0.76
Non-Cytoplasmic	355	360	0.51
Transmembrane Helix	361	380	0.57
Cytoplasmic	381	585	0.67