YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8978271
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	55	0.88
Non-Cytoplasmic	56	79	0.84
Transmembrane Helix	80	101	0.93
Cytoplasmic	102	121	0.78
Transmembrane Helix	122	146	0.86
Non-Cytoplasmic	147	173	0.86
Transmembrane Helix	174	195	0.88
Cytoplasmic	196	215	0.81
Transmembrane Helix	216	237	0.92
Non-Cytoplasmic	238	251	0.83
Transmembrane Helix	252	275	0.88
Cytoplasmic	276	284	0.79
Transmembrane Helix	285	303	0.83
Non-Cytoplasmic	304	306	0.56
Transmembrane Helix	307	325	0.79
Cytoplasmic	326	360	0.63
Transmembrane Helix	361	375	0.30
Non-Cytoplasmic	376	447	0.68
Transmembrane Helix	448	469	0.70
Cytoplasmic	470	567	0.90
Transmembrane Helix	568	592	0.86
Non-Cytoplasmic	593	603	0.78
Transmembrane Helix	604	626	0.93
Cytoplasmic	627	739	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDHETPLLS KDLSSSSSSS SSSSSVVVSS LKWILKVVMS VIFVTWVVFL MMYPGSLGDQ  60
   61 ILTNWRAISS NTLFGLTGSM FLIFSGPILV IAILASLYLI ISGEETVFTK FRLWTFPVLV 120
  121 DGPFGVVSAA EFLGIMVFSV FFLWAIYAYT LRNLNVLDYF HVLPNNRSIF LLELTGLRFG 180
  181 MIGLLCMVFL FLPISRGSIL LRLIDIPFEH ATRYHVWLGH ITMTFFSLHG LCYVVGWTIQ 240
  241 GQLLELLFEW KATGIAVLPG VISLVAGLLM WVTSLHTVRK NYFELFFYTH QLYIVFVVFL 300
  301 ALHVGDYLFS IVAGGIFLFI LDRFLRFYQS RRTVDVISAK SLPCGTLELV LSKPPNMRYN 360
  361 ALSFIFLQVK ELSWLQWHPF SVSSSPLDGN HHVAVLIKVL GGWTAKLRDQ LSTLYEAENQ 420
  421 DQLISPESYP KITTCVEGPY GHESPYHLAY ENLVLVAGGI GITPFFAILS DILHRKRDGK 480
  481 DCLPGKVLVV WAIKNSDELS LLSAIDIPSI CHFFSKKLNL EIHIYVTRQS EPCLEDGMVH 540
  541 KVVHPSVKTP WTNGCSMSVL VGTGDNIWSG LYLIISTIGF IAMITLVDIF YINKYNITTW 600
  601 WYKGLLFVVC MVASVLIFGG LVVVFWHRWE HKTGEVEANG NDKVDLNGEE THNPSAAELK 660
  661 GLAIEEDVQN YTTIRYGTRP AFREIFESLN GKWGSVDVGV IVCGPATLQT TVAKEIRSHS 720
  721 IWRSANHPLF HFNSHSFDL