YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9665157, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV VLSVSGCSPG MAWTVVNLAH  60
   61 FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR NRKFLTLVPV VLYLIASHTT 120
  121 DYRHPWLFLN TLAVMVLVVA KFPNMHKPTR VVNPAVSDAY QAKQVIETVS FCVPNSEAFT 180
  181 EETVNLVPWG QRV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.65
Transmembrane Helix	20	42	0.84
Non-Cytoplasmic	43	48	0.45
Transmembrane Helix	49	68	0.69
Cytoplasmic	69	101	0.58
Transmembrane Helix	102	117	0.49
Non-Cytoplasmic	118	125	0.58
Transmembrane Helix	126	143	0.83
Cytoplasmic	144	193	0.88