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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25453520, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIRRFVRLS LLIIALVSSL CESQKNFACD ISAPATAKYG FCNVSLSYEA RAKDLVSRLS  60
   61 LKEKVQQLVN KATGVPRLGV PPYEWWSEAL HGVSDVGPGV HFNGTVPGAT SFPATILTAA 120
  121 SFNTSLWLKM GEVVSTEARA MHNVGLAGLT YWSPNVNVFR DPRWGRGQET PGEDPLVVSK 180
  181 YAVNYVKGLQ DVHDAGKSRR LKVSSCCKHY TAYDLDNWKG IDRFHFDAKV TKQDLEDTYQ 240
  241 TPFKSCVEEG DVSSVMCSYN RVNGIPTCAD PNLLRGVIRG QWRLDGYIVS DCDSIQVYFN 300
  301 DIHYTKTRED AVALALKAGL NMNCGDFLGK YTENAVKLKK LNGSDVDEAL IYNYIVLMRL 360
  361 GFFDGDPKSL PFGNLGPSDV CSKDHQMLAL EAAKQGIVLL ENRGDLPLPK TTVKKLAVIG 420
  421 PNANATKVMI SNYAGVPCKY TSPIQGLQKY VPEKIVYEPG CKDVKCGDQT LISAAVKAVS 480
  481 EADVTVLVVG LDQTVEAEGL DRVNLTLPGY QEKLVRDVAN AAKKTVVLVI MSAGPIDISF 540
  541 AKNLSTIRAV LWVGYPGEAG GDAIAQVIFG DYNPSGRLPE TWYPQEFADK VAMTDMNMRP 600
  601 NSTSGFPGRS YRFYTGKPIY KFGYGLSYSS FSTFVLSAPS IIHIKTNPIM NLNKTTSVDI 660
  661 STVNCHDLKI RIVIGVKNHG LRSGSHVVLV FWKPPKCSKS LVGGGVPLTQ LVGFERVEVG 720
  721 RSMTEKFTVD FDVCKALSLV DTHGKRKLVT GHHKLVIGSN SDQQIYHHLN VRLAGDSTKH 780
  781 RILMEGLIPY LIHAIKKDHK PDHQRYRSIS VGSSRSYRPL MMGQDGSSSM QGSSHRRTRS 840
  841 DYNPHVIMDK FDQRSSGFGQ EFVNKDSSSQ KIATKT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle