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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB19B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL  60
   61 LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS SYAEIACWMY SGERQVAALR 120
  121 KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG 180
  181 FVSAWKLALL SVAVIPGIAF AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY 240
  241 VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD 300
  301 GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ 360
  361 VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG GSGSGKSTVV SLIERFYDPN 420
  421 SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA 480
  481 NAHSFITLLP KGYDTQVGER GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES 540
  541 IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR 600
  601 FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA 660
  661 ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI GPTFAIVMSN MIEVFYYTDY 720
  721 DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD 780
  781 EDEHNSSLIA ARLATDAADV KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF 840
  841 PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR 900
  901 VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA 960
  961 NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA DPVETIRGDI EFRHVDFAYP1020
 1021 SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN1080
 1081 LKSLRLKIGL VQQEPALFAA TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT1140
 1141 PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT1200
 1201 VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle