YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25405684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKINVGHE ASSMLLIPSF TANSNEPPPS KLSLSDLSMA ILKSHFFLLF PLLLLHFHTV  60
   61 SFAQTLFVFG DGLYDAGNKQ FLSQNRVDAS FPPYGVTVGQ ATGRWSDGSI VPDYLAKFMG 120
  121 IPKISPILLT TADFSHGANF AIADATVLGS PPETMTLSQQ VKKFSENKNK WTNQTRSEAI 180
  181 YLIYIGSDDY LSYAKSNPSP SDTQKQAFVD QVITTIKAEI KVVYGSGGRK FAFQNLAPLG 240
  241 CLPAVKQASG NVQECVKLPS EMAALHNKKL LQLLVELSRE LNGFQYSFYD FFSSIQNRVI 300
  301 KSKTYTFETG NAACCGTGSI NGSNCSAKNV CAKPEEYIFF DGKHLTQEAN LQVGHLMWGA 360
  361 DPEVIGPNNI RELMVLPLDI TVILAGIQEA MAAMRPRQSN IESLYDIKKM ESEMDNHWLY 420
  421 QVDKAISFMI

Type	Start	End	Confidence
Cytoplasmic	1	40	0.78
Transmembrane Helix	41	60	0.73
Non-Cytoplasmic	61	430	0.96