YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6587811, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAKEKKNP EISVSITIST WGAFAVYVIT GLFLIFGFHV VRNKYSVDLI SDPTLTLRLL  60
   61 WIIEFPIVVI IYSLFRRNPE KCSYFRAVGR SLVGLIAGAL INALGAVSLG APIGMQSLSK 120
  121 TIHWSFLMSV FTVVPATAVL GASWIDWHRI FASLKPIGII EHMLLVPAYG AIIGGWFGAW 180
  181 PMPLDWERPW QEWPICVCYG AIGGYIGGQM LGLMRTCEAQ YLTVRVIYHG QTLSDDVACN 240
  241 YWLTGPQLCH RFTYMVKCCQ VQPLKHGPTP

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	40	0.87
Non-Cytoplasmic	41	54	0.94
Transmembrane Helix	55	75	0.92
Cytoplasmic	76	91	0.84
Transmembrane Helix	92	113	0.90
Non-Cytoplasmic	114	121	0.87
Transmembrane Helix	122	145	0.89
Cytoplasmic	146	158	0.84
Transmembrane Helix	159	180	0.88
Non-Cytoplasmic	181	192	0.81
Transmembrane Helix	193	213	0.85
Cytoplasmic	214	270	0.93