YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLM_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV  60
   61 VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM LMEEMVRWMF RVGAESEWFV 120
  121 FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY 180
  181 NTTHEKILEM KNKLHHGTEE KVKKSE

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	47	0.87
Non-Cytoplasmic	48	51	0.71
Transmembrane Helix	52	71	0.91
Cytoplasmic	72	108	0.92
Transmembrane Helix	109	131	0.69
Non-Cytoplasmic	132	136	0.65
Transmembrane Helix	137	158	0.75
Cytoplasmic	159	206	0.78