YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15231146, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSLFLVA LLVGSFAFTS FASVANRKLK SGLEDQKTFF HHPGGGLGGG GGIGGGSGLG  60
   61 GGGGFGGGGG LGGGAGGGGG LGGGAGGGAG GGFGGGAGSG GGLGGGGGAG GGFGGGAGGG 120
  121 SGGGFGGGAG AGGGLGGGGG AGGGGGFGGG GGSGIGGGFG GGAGAGGGFG GGHH

Type	Start	End	Confidence
Signal Peptide	1	22	0.65
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	45	0.64
Transmembrane Helix	46	72	0.73
Cytoplasmic	73	73	0.34
Transmembrane Helix	74	103	0.71
Non-Cytoplasmic	104	108	0.42
Transmembrane Helix	109	139	0.68
Cytoplasmic	140	143	0.34
Transmembrane Helix	144	169	0.79
Non-Cytoplasmic	170	174	0.51