YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6715650
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASEHRCVG CGFRVKSLFI QYSPGNIRLM KCGNCKEVAD EYIECERMVC FNHFLSLFGP  60
   61 KVYRHVLYNA INPATVNIQV KNYFNSTSRC VVGEIHRQTY LKSPELIIDR SLLLRKSDEE 120
  121 SSFSDSPVLL SIKVLIGVLS ANAAFIISFA IATKGLLNEV SRESLLLQVW EFPMSVIFFV 180
  181 DILLLTSNSM ALKGQTFKMF SMQIVFCCCY FGISQCKFVF KPVMTESTMT RCIAVCLIAH 240
  241 LIRFLVGQIF EPTIFLIQIG SLLQYMSYFF RIV

Type	Start	End	Confidence
Non-Cytoplasmic	1	129	0.63
Transmembrane Helix	130	153	0.86
Cytoplasmic	154	165	0.55
Transmembrane Helix	166	187	0.82
Non-Cytoplasmic	188	198	0.50
Transmembrane Helix	199	219	0.78
Cytoplasmic	220	227	0.69
Transmembrane Helix	228	247	0.71
Non-Cytoplasmic	248	252	0.46
Transmembrane Helix	253	272	0.63
Cytoplasmic	273	273	0.58