YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3738323, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF  60
   61 PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY ITCFVQLASI ITGKFWYTYL 120
  121 VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	39	0.92
Non-Cytoplasmic	40	92	0.53
Transmembrane Helix	93	118	0.46
Cytoplasmic	119	173	0.63