YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15230097, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGERSKLTT NHFYNHQIIL CYFLIISQVS IASSNTSNVG VNWGIMASHQ LPPEKVVKML  60
   61 MDNSFTKLKL FEADQNILDA LIGSDIEVMI GIPNRFLKEM AQDTSVAASW VEENVTAYSY 120
  121 NGGVNIKYIA VGNEPFLQTY NGTYVEFTLP ALINIQRALE EADLKNVKVT VPFNADIYFS 180
  181 PEANPVPSAG DFRPELRDAT IEIINFLYSH DSPFTVNIYP FLSLYGNAYF PLDFAFFDGT 240
  241 NKSLRDGNLV YTNVFDANLD TLICAMERYS FLGMKIIVGE VGWPTDGDKN ANVKSAKRFN 300
  301 QGMVKHAMSG NGTPARKGVI MDVYLFSLVD EDAKSIAPGT FERHWGIFEF DGRPKYELDL 360
  361 SGKGNDKPLV PVEDVKYLPK TWCILDPNAY NLDDLPDNID YACSLSDCTA LGYGSSCNHL 420
  421 TATGNVSYAF NMYYQMHDQK TWDCDFLGLG LITDEDPSDE LCEFPVMIDT GDSTRLQPGS 480
  481 SRVLTRVAAA VLVMLVLPIL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.51
Transmembrane Helix	13	32	0.48
Non-Cytoplasmic	33	500	0.96