YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.91
Transmembrane Helix	106	127	0.80
Non-Cytoplasmic	128	130	0.66
Transmembrane Helix	131	153	0.85
Cytoplasmic	154	173	0.89
Transmembrane Helix	174	194	0.92
Non-Cytoplasmic	195	199	0.78
Transmembrane Helix	200	218	0.93
Cytoplasmic	219	225	0.81
Transmembrane Helix	226	247	0.90
Non-Cytoplasmic	248	255	0.79
Transmembrane Helix	256	276	0.82
Cytoplasmic	277	297	0.81
Transmembrane Helix	298	317	0.87
Non-Cytoplasmic	318	324	0.72
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	355	0.91
Transmembrane Helix	356	374	0.91
Non-Cytoplasmic	375	431	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRRSVVYRF SSRISVSSSL PNPRLIPWSR ELCAVNSFSQ PPVSTESTAK LGITGVRSDA  60
   61 NRVFATATAA ATATATTGEI SSRVAALAGL GHHYARCYWE LSKAKLSMLV VATSGTGYIL 120
  121 GTGNAAISFP GLCYTCAGTM MIAASANSLN QIFEISNDSK MKRTMLRPLP SGRISVPHAV 180
  181 AWATIAGASG ACLLASKTNM LAAGLASANL VLYAFVYTPL KQLHPINTWV GAVVGAIPPL 240
  241 LGWAAASGQI SYNSMILPAA LYFWQIPHFM ALAHLCRNDY AAGGYKMLSL FDPSGKRIAA 300
  301 VALRNCFYMI PLGFIAYDWG LTSSWFCLES TLLTLAIAAT AFSFYRDRTM HKARKMFHAS 360
  361 LLFLPVFMSG LLLHRVSNDN QQQLVEEAGL TNSVSGEVKT QRRKKRVAQP PVAYASAAPF 420
  421 PFLPAPSFYS P