YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1F1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTYGTNQKS SNDLAPKLEY ITRGINQHKR SGLATRRPWK QMLDLGSFNF PRKLATVITR  60
   61 IRANTVYFQT NYTIVVLFSV FLSLIWNPFS LLVLLALLGA WLFLYFLRDE PLTVFDREID 120
  121 HRIVLIIMSV ITLSILFLTD AKLNIAVAIV AGALAVLSHA AVRKTEDLFQ TDEETSLLNP 180
  181

Type	Start	End	Confidence
Cytoplasmic	1	64	0.85
Transmembrane Helix	65	85	0.73
Non-Cytoplasmic	86	88	0.58
Transmembrane Helix	89	107	0.92
Cytoplasmic	108	118	0.83
Transmembrane Helix	119	138	0.89
Non-Cytoplasmic	139	144	0.63
Transmembrane Helix	145	162	0.87
Cytoplasmic	163	180	0.82