YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67633576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	38	0.91
Non-Cytoplasmic	39	46	0.73
Transmembrane Helix	47	66	0.92
Cytoplasmic	67	96	0.86
Transmembrane Helix	97	121	0.87
Non-Cytoplasmic	122	131	0.82
Transmembrane Helix	132	152	0.93
Cytoplasmic	153	160	0.80
Transmembrane Helix	161	180	0.95
Non-Cytoplasmic	181	198	0.82
Transmembrane Helix	199	221	0.88
Cytoplasmic	222	231	0.88
Transmembrane Helix	232	255	0.89
Non-Cytoplasmic	256	280	0.89
Transmembrane Helix	281	303	0.89
Cytoplasmic	304	355	0.96
Transmembrane Helix	356	375	0.93
Non-Cytoplasmic	376	382	0.79
Transmembrane Helix	383	403	0.94
Cytoplasmic	404	412	0.89
Transmembrane Helix	413	435	0.92
Non-Cytoplasmic	436	436	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLEITHET KKGKSFWAAV SLIIGTAVGP GMLGLPAATI RSGSIPSTIA LLCSWVYVIS  60
   61 SILLVAELSF AAMEEDNAAE VSFTGLATKS FGNKFGVFVA FVYASLSFSL MVACVSGIGS 120
  121 IVSQWFPSMN PFLANAIFPL VSGILIGFFP FNAIDFTNRG LCFLMLFSIT SLVAIGLSVA 180
  181 RSNVLASFGQ SCWKVSMVLP AVPVMVLTLG FHVITPFICN LAGDSVSDAR RAILVGGVVP 240
  241 LAMVLSWNLI VLGLARITVP AAPSSTIDPI SLLLSVNPSA LSAVQGFAFS ALATSLIGYA 300
  301 VSFPKQLLDT WKLVSKQSNG NGRLGSVSFS SKERDRRTNG RASYNEPARA RDGFEAVVML 360
  361 FVLGVPALIA TFFPSTFSRA LDFAGVYANC FLFGVLPPAM AYIQQSRKKL RPWVLPGGNF 420
  421 TLLILFAIAI ILGIWH